Solvation versus freezing in a heteropolymer globule.
نویسندگان
چکیده
We address the response of a random heteropolymer to preferential solvation of certain monomer types at the globule-solvent interface. For each set of monomers that can comprise the molecule's surface, we represent the ensemble of allowed configurations by a Gaussian distribution of energy levels, whose mean and variance depend on the set's composition. Within such a random energy model, mean surface composition is proportional to solvation strength under most conditions. The breadth of this linear response regime arises from the approximate statistical independence of surface and volume energies. Fluctuations play a crucial role in determining the excess of solvophilic monomers at the surface, and for a diverse set of monomer types can be overcome only by very strong solvent preference.
منابع مشابه
Reversible stretching of random heteropolymers.
We analyze the equilibrium response of random heteropolymers to mechanical deformation. In contrast to homopolymer response, the stress-induced transformation of a heteropolymer from globule to coil need not be sharp. For chain lengths relevant to biological macromolecules, intermediate necklace-like structures dominate over a range of applied force. Stability of these conformations is primaril...
متن کاملChange in the elasticity of a random heteropolymer chain induced by freezing
– We consider a simple model of a random heteropolymer chain that is known to undergo the freezing transition. We investigate the change in the elastic properties of the chain upon freezing. The elastic constants are evaluated and it is shown that they acquire a non-trivial contribution in the frozen phase. The goal of this letter is to investigate the elasticity of a random heteropolymer chain...
متن کاملIs heteropolymer freezing well described by the random energy model?
It is widely held that the Random Energy Model (REM) describes the freezing transition of a variety of types of heteropolymers. We demonstrate that the hallmark property of REM, statistical independence of the energies of states over disorder, is violated in different ways for models commonly employed in heteropolymer freezing studies. The implications for proteins are also discussed.
متن کاملDynamics of heteropolymers in dilute solution: Effective equation of motion and relaxation spectrum.
The dynamics of a heteropolymer chain in solution is studied in the limit of long chain length. Using functional integral representation we derive an effective equation of motion, in which the heterogeneity of the chain manifests itself as a time-dependent excluded volume effect. At the mean field level, the heteropolymer chain is therefore dynamically equivalent to a ho-mopolymer chain with bo...
متن کاملPhase diagram of a model protein derived by exhaustive enumeration of the conformations
An understanding of the various states available to a polypeptide chain is important for a description of the protein folding process. We use a 16-monomer chain on a two-dimensional square lattice to model a protein. This makes it possible to enumerate all self-avoiding conformations from which any equilibrium thermodynamic quantity can be calculated. By varying the external conditions of tempe...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
عنوان ژورنال:
- Physical review. E, Statistical, nonlinear, and soft matter physics
دوره 70 2 Pt 1 شماره
صفحات -
تاریخ انتشار 2004